I think I see a couple of problems here. The lesser problem is the jumper issue. Do you have another IDE device, such as a CD drive, attached to the same cable as the hard drive? If so, device on the end of the cable should be set to master and the middle device should be set to slave. If your system supports cable select and you wish to use it, BOTH devices should be set to CS.
The other issue is you are using a hard drive that was installed and formatted on another motherboard. The hard drive has drivers for and is configured for the old motherboard. When you switched motherboards, you need to perform a Windows repair or if that doesn't work, reformat and reinstall Windows on the hard drive. Unless the new motherboard is identical to the old one, it is not a plug and play device.
In the BIOS set the first boot device as your CD drive, save and exit. Put the Windows CD into the drive tray and reboot. Go from there.
One other issue you might encounter is activating Windows after the reinstall. An OEM version is tied to the original motherboard it was installed with. Technically you aren't supposed to be able to install it with any other motherboard. You might have to telephone Microsoft to activate Windows and I suppose there is a possibility they won't let you. Then you would have to buy another copy. If you have a retail version of Windows, you should not have that problem.