You are absolutely right.
But the thing is what do you mean by "we".
If you are driving a car through a tunnel where only one direction is allowed at a time then certainly you have to acknowledge this fact. You have wait for the green light etc. The amount of lanes is important to you.
If you are a passenger in the car then you couldn't care less. You get to your destination no matter the type of the tunnels. Futhermore, all the passengers coming in the other direction don't care either and they all get to where they are going. And if we look at the big picture then the traffic on both highways before and after the tunnel is in two directions.
The one-directional part of the road imposes a certain delay, but it doesn't matter to the people
travelling since the drivers take care of that nasty tunnel for them.
If you sit on a bus at one end of the highway and your friend at the other and you start off at the same time then you don't collide and die in the middle of the tunnel. One of you will be waiting at the red light until the other bus comes through. Yes, there is only one of you in the tunnel at any moment, but both of you were travelling on the bus the whole time.
Even though you know there is a one-way tunnel on your way from city A to city B you don't have to call ahead and make sure there are no buses coming from city B. You just sit on a bus and you will get to city B (eventually) no matter what traffic is coming the other way. Of course things will get complicated if the traffic is heavy both ways
