Freeman14, you may want to do a google seach on boot sector virus and removal. As for its removal or other infections I strongly recommend the next step of going to the Virus & Malware removal forums here. There or guys there that really know their stuff and can be a big help. If you go there and post make sure you read all three stickies by Julio at the top of the forum. You could make the subject something like "Possible Boot Sector Virus?" and then tell them of your issues, the infections, and the steps you took in the attempt to fix it. I just can't help believe that you are still infected in some manner but I wouldn't dare try to give you an answer when others here are much more knowleageable in this area. Perhaps we missed something hardware wise but I think you did a lot of good diagnostic work.